Jmol Documentation


Table of Contents

1. Introduction
2. Command Line Options
Other user options
-Duser.language
-Ddisplay.speed
-Xmx
Developers/Debug Options
-Dcdk.debugging
-Dcdk.debug.stdout
-DJmolConsole
3. Menu description
The File menu
Open
Recent Files...
Script...
Save As...
Export
Print
Exit
The Edit menu
Select All
Deselect All
Make Crystal...
Atom Properties...
Preferences...
The Display menu
Atom Style
Bond Style
Atom Labels
Atom Coloring
Wireframe Rotation
Perspective Depth
Axes
Bounding Box
Hydrogens
Vectors
Measurements
The View menu
Front/Top/Bottom/Right/Left
Transform
Define center
The Measure menu
Distance...
Angle...
Dihedral...
Delete Distance/Angle/Dihedral
Clear all Distances/Angles/Dihedrals
Clear all Measurements...
View Measurement List...
The Extras menu
Animate...
Vibrate...
Graph...
Crystal Properties...
The Help menu
About Jmol
User Guide
What's New
Jmol Console
4. RasMol/Chime Scripts
RasMol/Chime commands
animation or anim
backbone
background
cartoon or cartoons
center or centre
color or colour
cpk or spacefill
define
delay
depth
dots
echo
exit
font
frame or model
hbonds
hover
label or labels
load
loop
mesh
monitor or measure
moveto
move
quit
refresh
reset
restrict
ribbon or ribbons
rocket or rockets
rotate
script or source
select
set (bond styles)
set (colors)
set (highlights)
set (lighting and perspective)
set (visibility)
show
slab
spin
ssbonds
strands
trace
translate
vector or vectors
vibration
wireframe
zap
zoom